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custom-designed combimatrix 4x2k arrays  (CombiMatrix)

 
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    CombiMatrix custom-designed combimatrix 4x2k arrays
    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and <t>4x2k</t> SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).
    Custom Designed Combimatrix 4x2k Arrays, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/4x2k+custom+array/4x2k+custom+array/pmc03176531-549-4-3
    Average 90 stars, based on 1 article reviews
    custom-designed combimatrix 4x2k arrays - by Bioz Stars, 2026-09
    90/100 stars

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    1) Product Images from "Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide"

    Article Title: Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide

    Journal: Genetics

    doi: 10.1534/genetics.111.128256

    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).
    Figure Legend Snippet: Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Techniques Used: Diagnostic Assay

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    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. For the first-generation CRISPR spacer-based microarray, the platform was the CombiMatrix (Mukilteo, WA) 4X2K custom array. ..

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. The second generation of microarrays was expanded to include all of the CRISPR spacer sequences derived from CHANN041 and NL10 cellular metagenomes on the CombiMatrix 4X2K custom array. ..

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. The second generation of microarrays was expanded to include all of the CRISPR spacer sequences derived from CHANN041 and NL10 cellular metagenomes on the CombiMatrix 4X2K custom array. ..

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. For the first-generation CRISPR spacer-based microarray, the platform was the CombiMatrix (Mukilteo, WA) 4X2K custom array. ..

    Microarray:

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. For the first-generation CRISPR spacer-based microarray, the platform was the CombiMatrix (Mukilteo, WA) 4X2K custom array. ..

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. For the first-generation CRISPR spacer-based microarray, the platform was the CombiMatrix (Mukilteo, WA) 4X2K custom array. ..

    Article Title: KALANCHOE × HOUGHTONII SSH AND MICROARRAY ANALYSIS TO SCREEN GENES INVOLVED IN VIVIPARY
    Article Snippet: Vivipary, referred here as the formation of novel complete plantlets on mature organs, has been reported in many families as an asexual propagation strategy.. In K. × houghtonii (Crassulaceae), viviparous plantlets are formed on leaf margin notches in response to a long day photoperiod and their appearance follow a basipetal fashion.. To identify genes involved in this process, suppression subtractive hybridisation libraries (SSH) were prepared.

    Derivative Assay:

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. The second generation of microarrays was expanded to include all of the CRISPR spacer sequences derived from CHANN041 and NL10 cellular metagenomes on the CombiMatrix 4X2K custom array. ..

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
    Article Snippet: .. The second generation of microarrays was expanded to include all of the CRISPR spacer sequences derived from CHANN041 and NL10 cellular metagenomes on the CombiMatrix 4X2K custom array. ..

    Synthesized:

    Article Title: KALANCHOE × HOUGHTONII SSH AND MICROARRAY ANALYSIS TO SCREEN GENES INVOLVED IN VIVIPARY
    Article Snippet: Vivipary, referred here as the formation of novel complete plantlets on mature organs, has been reported in many families as an asexual propagation strategy.. In K. × houghtonii (Crassulaceae), viviparous plantlets are formed on leaf margin notches in response to a long day photoperiod and their appearance follow a basipetal fashion.. To identify genes involved in this process, suppression subtractive hybridisation libraries (SSH) were prepared.

    Labeling:

    Article Title: KALANCHOE × HOUGHTONII SSH AND MICROARRAY ANALYSIS TO SCREEN GENES INVOLVED IN VIVIPARY
    Article Snippet: Vivipary, referred here as the formation of novel complete plantlets on mature organs, has been reported in many families as an asexual propagation strategy.. In K. × houghtonii (Crassulaceae), viviparous plantlets are formed on leaf margin notches in response to a long day photoperiod and their appearance follow a basipetal fashion.. To identify genes involved in this process, suppression subtractive hybridisation libraries (SSH) were prepared.

    RNA Amplification:

    Article Title: KALANCHOE × HOUGHTONII SSH AND MICROARRAY ANALYSIS TO SCREEN GENES INVOLVED IN VIVIPARY
    Article Snippet: Vivipary, referred here as the formation of novel complete plantlets on mature organs, has been reported in many families as an asexual propagation strategy.. In K. × houghtonii (Crassulaceae), viviparous plantlets are formed on leaf margin notches in response to a long day photoperiod and their appearance follow a basipetal fashion.. To identify genes involved in this process, suppression subtractive hybridisation libraries (SSH) were prepared.



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    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and <t>4x2k</t> SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).
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    Image Search Results


    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Journal: Genetics

    Article Title: Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide

    doi: 10.1534/genetics.111.128256

    Figure Lengend Snippet: Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Article Snippet: SSA via custom-designed Combimatrix 4x2k arrays provides an economic application that facilitates genotyping of segregants of any cross between strains whose genomes have been sequenced.

    Techniques: Diagnostic Assay

    Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Journal: Genetics

    Article Title: Oxidative Stress Survival in a Clinical Saccharomyces cerevisiae Isolate Is Influenced by a Major Quantitative Trait Nucleotide

    doi: 10.1534/genetics.111.128256

    Figure Lengend Snippet: Peroxide survival candidate QTL as identified by BSA and SSA. Shown is a combination of all four S98 BSA and 4x2k SSA genotyping analyses. (A) S98 one-mismatch SFPs, (B) S98 two-mismatch SFPs, (C) 4x2k SFPs with gaps, (D) 4x2k ≥3 consecutive SFPs. The black horizontal line at the bottom is the S. cerevisiae genome with its chromosomes indicated by roman numerals between the beginning (left) and end (right) of each chromosome (short vertical bars). Chromosome lengths are drawn to scale. Candidate QTL are marked by short horizontal bars. Red bars represent loci that were found in the most conservative analysis (B) and at least one other analysis. These regions are highlighted by red vertical lines and their approximate position on the chromosome is indicated at the bottom. Black arrows point to candidate QTL that have been tested with diagnostic RFLPs (Table 2).

    Article Snippet: The 22 BCI segregants were separately hybridized to the 4x2k Combimatrix custom-designed array and compared to both parental strains.

    Techniques: Diagnostic Assay

    Probe category and the number of probes on the two generations of microarrays

    Journal: Applied and Environmental Microbiology

    Article Title: Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples ▿ †

    doi: 10.1128/AEM.01109-10

    Figure Lengend Snippet: Probe category and the number of probes on the two generations of microarrays

    Article Snippet: The second generation of microarrays was expanded to include all of the CRISPR spacer sequences derived from CHANN041 and NL10 cellular metagenomes on the CombiMatrix 4X2K custom array.

    Techniques: CRISPR